Post by Adam Craig on Jun 7, 2021 17:31:13 GMT -5
I was trying to conduct an enrichment analysis in DAVID with genes listed by their Wormbase IDs, but DAVID does not seem to be able to identify them.
It takes me to the gene mapping tool but then says that 70 of the 128 genes are not in DAVID DB.
Some of the IDs are present in WormBase as-is, while others are present with a, b, or c appended to them.
Is there a way to get DAVID to recognize these gene IDs?
Here is the list of genes DAVID was unable to map with WormBase URLs for the first 10:
T09A5.10 wormbase.org/species/c_elegans/cds/T09A5.10#06--10
D1054.2 wormbase.org/species/c_elegans/cds/D1054.2#06--10
F23F1.8 wormbase.org/species/c_elegans/cds/F23F1.8a#06--10 https://wormbase.org/species/c_elegans/cds/F23F1.8b#06--10 https://wormbase.org/species/c_elegans/cds/F23F1.8:wp135#06--10
ZK945.2 wormbase.org/species/c_elegans/cds/ZK945.2#06--10
F28C6.7 wormbase.org/species/c_elegans/cds/F28C6.7a#06--10 https://wormbase.org/species/c_elegans/cds/F28C6.7b#06--10 https://wormbase.org/species/c_elegans/cds/F28C6.7c#06--10
T06D8.8 wormbase.org/species/c_elegans/cds/T06D8.8#06--10
Y110A7A.17 wormbase.org/species/c_elegans/cds/Y110A7A.17a#06--10 https://wormbase.org/species/c_elegans/cds/Y110A7A.17b#06--10 https://wormbase.org/species/c_elegans/cds/Y110A7A.17:wp126#06--10 https://wormbase.org/species/c_elegans/cds/Y110A7A.17b:wp274#06--10
JC8.3 wormbase.org/species/c_elegans/cds/JC8.3a#06--10 https://wormbase.org/species/c_elegans/cds/JC8.3c#06--10 https://wormbase.org/species/c_elegans/cds/JC8.3b:wp113#06--10
W02D9.1 wormbase.org/species/c_elegans/cds/W02D9.1a#06--10 https://wormbase.org/species/c_elegans/cds/W02D9.1b#06--10
T25C8.2 wormbase.org/species/c_elegans/cds/T25C8.2#06--10
F40F11.1
F22B5.2
F57B9.10
F13B10.2
Y48G8AL.8
F59E12.2
Y53F4B.22
C52E4.4
Y110A7A.14
ZK637.8
T22D1.9
Y105E8A.16
ZK652.4
Y74C10AR.1
T19A5.2
M01F1.2
ZK858.4
C23G10.3
F27C1.7
F36A2.6
M03D4.1
F52B5.6
Y54E2A.11
F28D1.7
C36B1.4
T26A5.9
C39E9.14
C47E8.5
T04C12.6
M110.4
T01H3.1
Y38F2AL.3
F01F1.12
F25B5.4
F37C12.9
F58A4.4
R10E11.2
Y106G6H.2
F10G7.8
T01C3.6
T01G9.5
F53G12.10
ZK970.4
C09D4.5
H15N14.2
B0348.6
Y73B6A.5
B0336.10
F10B5.1
T24B8.1
Y48G1A.5
Y71F9AL.13
C30F8.2
C34E10.6
F55H2.2
F53A3.3
F25H2.9
W04D2.1
Y45F10D.12
C49H3.11
It takes me to the gene mapping tool but then says that 70 of the 128 genes are not in DAVID DB.
Some of the IDs are present in WormBase as-is, while others are present with a, b, or c appended to them.
Is there a way to get DAVID to recognize these gene IDs?
Here is the list of genes DAVID was unable to map with WormBase URLs for the first 10:
T09A5.10 wormbase.org/species/c_elegans/cds/T09A5.10#06--10
D1054.2 wormbase.org/species/c_elegans/cds/D1054.2#06--10
F23F1.8 wormbase.org/species/c_elegans/cds/F23F1.8a#06--10 https://wormbase.org/species/c_elegans/cds/F23F1.8b#06--10 https://wormbase.org/species/c_elegans/cds/F23F1.8:wp135#06--10
ZK945.2 wormbase.org/species/c_elegans/cds/ZK945.2#06--10
F28C6.7 wormbase.org/species/c_elegans/cds/F28C6.7a#06--10 https://wormbase.org/species/c_elegans/cds/F28C6.7b#06--10 https://wormbase.org/species/c_elegans/cds/F28C6.7c#06--10
T06D8.8 wormbase.org/species/c_elegans/cds/T06D8.8#06--10
Y110A7A.17 wormbase.org/species/c_elegans/cds/Y110A7A.17a#06--10 https://wormbase.org/species/c_elegans/cds/Y110A7A.17b#06--10 https://wormbase.org/species/c_elegans/cds/Y110A7A.17:wp126#06--10 https://wormbase.org/species/c_elegans/cds/Y110A7A.17b:wp274#06--10
JC8.3 wormbase.org/species/c_elegans/cds/JC8.3a#06--10 https://wormbase.org/species/c_elegans/cds/JC8.3c#06--10 https://wormbase.org/species/c_elegans/cds/JC8.3b:wp113#06--10
W02D9.1 wormbase.org/species/c_elegans/cds/W02D9.1a#06--10 https://wormbase.org/species/c_elegans/cds/W02D9.1b#06--10
T25C8.2 wormbase.org/species/c_elegans/cds/T25C8.2#06--10
F40F11.1
F22B5.2
F57B9.10
F13B10.2
Y48G8AL.8
F59E12.2
Y53F4B.22
C52E4.4
Y110A7A.14
ZK637.8
T22D1.9
Y105E8A.16
ZK652.4
Y74C10AR.1
T19A5.2
M01F1.2
ZK858.4
C23G10.3
F27C1.7
F36A2.6
M03D4.1
F52B5.6
Y54E2A.11
F28D1.7
C36B1.4
T26A5.9
C39E9.14
C47E8.5
T04C12.6
M110.4
T01H3.1
Y38F2AL.3
F01F1.12
F25B5.4
F37C12.9
F58A4.4
R10E11.2
Y106G6H.2
F10G7.8
T01C3.6
T01G9.5
F53G12.10
ZK970.4
C09D4.5
H15N14.2
B0348.6
Y73B6A.5
B0336.10
F10B5.1
T24B8.1
Y48G1A.5
Y71F9AL.13
C30F8.2
C34E10.6
F55H2.2
F53A3.3
F25H2.9
W04D2.1
Y45F10D.12
C49H3.11