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Post by star111 on Jun 21, 2024 9:24:25 GMT -5
I'd like to use the DAVID functional classification tool to generate a gene-gene similarity matrix based on GO annotations. My current gene list is for Zebrafish (danio rerio) and contains 24711 individual genes. Is there a way to utilize the tool for a gene list this large?
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Post by Malarmathi on Jul 16, 2024 10:33:01 GMT -5
HSPB9 APOC3 HSPA2 CA2 APOH APOA1 PLG GC ALDOB BPGM SMC2 APOB TF HSP90AA1 CLU TM4SF4 HPD F2 CDK1 SPP2 UHRF1 AMBP CXCL14 TK1 AvBD10 CKAP2 ANK1 DNAJA4 KNG1 CYP2D6 B3GALT5 NUF2 MYOD1 NDC80 PDPN CENPK SPIA4 ATP8 RRM2 DCK2 CENPI CRY2 ND2 S100A12 PBK KPNA2 VGLL1 ITGA2B TUBA5 KIF4B VTN CA13 FGB SPC25 RACGAP1 IL17REL BRCA1 ND1 PCNA PHGDH MYBPC2 KNL1 SERPINC1 MGP ND6 MELK RAD51 CYTB FGA MXD3 CDH23 NDRG1 TFRC BG8 ND4L CENPE KAT2A GLUL WIF1 VEPH1 DUT KLHL4 PAPLN TOP2A PRPS2 ALB STMN2 FAH MYOC SLC16A1 AvBD13 CAV1 SLCO1B3 FAM84A NUSAP1 APOA4 STMN1 FGG SKA3 AHSG CAPSL FOXM1 MARCO PLK1 HMMR KIF11 ANGPT1 CDC45 MCM6 SLC7A1 CILP KNTC1 HMOX1 PIT54 ND4 ND5 ARNTL2 RBP4A V-BG RFESD TACC3 HBBA HOXB7 PER2 SERPINH1 TMPRSS6 XDH NCAPH ADH6 KIF15 MCM4 CENPF MCM5 ITIH2 LMNB2 LPAR2 WFDC1 IGSF10 NT5DC4 PTGDS ADAL MCM3 E2F2 NOTUM E2F1 LGMN RGCC RSFR SLC16A6 RHAG WNT7A SERPINB11 C7 GINS1 CATH3 CCNB1 WBP4 CYP2C18 KLF15 SLBP PPP1R14C CEMIP PSPH HHIP ATIC MSMO1 OSBPL1A CENPS KNSTRN CRISPLD1 ADRA2A TPX2 DEFB4A POLE DOT1L ITGB6 MBL2 CATH1 EPB42 LGALS1A SLC26A9 ATP6V0D2 WNT16 CPZ CIDEA HPGDS UBE2U HGFAC CPB2 CDKN2B NAV3 VEGFA MCRIP2 BIRC5 SLC6A12 F9 PTTG1IP ACP5 ADAMTSL1 OPRM1 LBFABP GATA3 SNX20 SLC43A2 NCAPD2 AURKA DLGAP5 LACC1 NCAPG2 ATP8B3 CUTA PNPLA3 TGM3 DPYS CMTM8 DHCR24 CCNA2 ARHGAP19 MCM2 PLPP3 CDKN1C GLS2 SHCBP1 WEE1 FTCD CCNB3 SPOCK1 TRPM6 RASD1 SLC16A10 SQLE ADH1C DOCK11 LECT2 MTMR11 THYN1 CXCR4 BORA TSPAN1 TDO2 CEBPD DCTD SERINC4 ECT2 SLC28A3 KMO SLC43A3 CNE2 RRM1 TTK AASS TRIM39.1 NSMF ERG HGD OTOA ECRG4 CPA6 DUSP5 SLC2A12 QRFPR PRXL2A KIF18A TTR HIGD1C HTRA1 CC2D2A SPTB YPEL1 CNTFR PIF1 PMM1 KIF23 PROZ HSPB8 ADCY8 CDCA3 IL1R2 CBX5 KHDRBS2 FETUB GASK1B KIF2C ITIH5 HMGCS2 EXO1 GTSE1 LGALS1B BPIFB3 RHOBTB3 MPEG1 PLA2G12B SHH SYP SLCO4C1 NKX2-8 ACTBL2 RGS5 IL22RA1 MARVELD3 KIF18B DMTN C1QB PTPRR FLRT3 IQGAP3 ALDH1L2 PTTG2 SFXN1 SPIA1 BUB1 DNAH17 RECQL4 MASP1 A1CF PAG1 ABHD17B RFC3 EMILIN2 KIF20A CDCA2 SLC4A3 ACSL5 CENPL EDA FHL2 AGT CRABP1 TMEM158 CDCA4 RAD54B TFPI2 SLC7A5 NMRK2 E2F8 SEMA3G MCM10 GAD1 CPQ SUSD3 GBE1 SGO1 CENPQ ZDHHC23 UPP1 FANCL FDFT1 C1QA FER1L6 DAW1 HMGXB4 TRIM27.1 SLC4A1 SNX10 MT3 UNC79 RHOBTB1 RSRP1 GAS2L3 C8B MIS18A GFPT2 CPS1 FBP1 PPIF IL22RA2 TENM2 KRT7 EXOSC6 FAM64A ASPM PDE4D KREMEN1 SLC25A48 TNIP3 MCF2 RNASE6 GLDC ORM1 PHOSPHO1 SLC2A11L5 MAP3K7CL DCAF17 C5orf49 LITAF LCT C8A VRK1 IGDCC4 SIDT1 TRAIP TBX20 CENPN DHFR ZNF385B KCNA2 BMF LAPTM5 C1S TMEM173 WDR37 TRAF3IP3 TIMP4 CCNO C27H17ORF105 NKAIN2 KLF9 GPT2 HLF IMPG2 G6PC1 PLK4 F5 DNA2 ALDH8A1 C4orf54 TENM3 PDIA2 DEPDC1B PTGER2 EDNRB2 SGPP2 NOS1 BTD LCAT PRR11 PCBD1 KCTD21 CRB2 SERPINA10 KCNH5 DTL NRSN1 CDHR1 NRBP2 MMUT RPS6KA2 PPM1F DSCC1 ADRB1 GALNT3 FABP1 SPON2 SLC15A1 PLN PDE8A ASPA TLR2 PCDH11X TRIM27.2 SDR42E2 ITIH3 ETNK2 KIAA1524 INPP5J ATP1B4 MAT1A NCAPD3 SLCO1C1 ASIC4 MPZL2 KLHL14 LIG1 TLR21 ZDHHC2 SOUL PBLD GLDN TRIM14 HJURP PMEL CYP21A1 HABP2 ITGB3BP CD200R1A CHAF1B TLR4 APOA5 CEP55 ENSGALG00010027528 ENSGALG00010002667 ENSGALG00010011399 ENSGALG00010027409 ENSGALG00010021710 ENSGALG00010021763 ENSGALG00010002750 ENSGALG00010022972 ENSGALG00010011074 ENSGALG00010012480 ENSGALG00010024682 ENSGALG00010000247 ENSGALG00010010326 ENSGALG00010019498 ENSGALG00010005487 ENSGALG00010028201 ENSGALG00010002384 ENSGALG00010003765 ENSGALG00010016177 ENSGALG00010028733 ENSGALG00010011830 ENSGALG00010014439 ENSGALG00010005534 ENSGALG00010015030 ENSGALG00010029207 ENSGALG00010012478 ENSGALG00010019292 ENSGALG00010028388 ENSGALG00010023750 ENSGALG00010002584 ENSGALG00010012473 ENSGALG00010011368 ENSGALG00010007857 ENSGALG00010013865 ENSGALG00010006269 ENSGALG00010014764 ENSGALG00010004981 ENSGALG00010014814 ENSGALG00010027281 ENSGALG00010017195 ENSGALG00010029558 ENSGALG00010026246 ENSGALG00010002557 ENSGALG00010015088 ENSGALG00010011234 ENSGALG00010026693 ENSGALG00010011328 ENSGALG00010029115 ENSGALG00010013957 ENSGALG00010016926 ENSGALG00010019663 ENSGALG00010030044 ENSGALG00010022479 ENSGALG00010014084 ENSGALG00010004839 ENSGALG00010023891 ENSGALG00010029797 ENSGALG00010009854 ENSGALG00010004560 ENSGALG00010021130 ENSGALG00010028401 ENSGALG00010027164 ENSGALG00010014598 ENSGALG00010029869 ENSGALG00010009615 ENSGALG00010029156 ENSGALG00010018145 ENSGALG00010025714 ENSGALG00010026235 ENSGALG00010007497 ENSGALG00010003033 ENSGALG00010015325 ENSGALG00010017814 ENSGALG00010017501 ENSGALG00010017979 ENSGALG00010006624 ENSGALG00010024132 ENSGALG00010015519 ENSGALG00010000768 ENSGALG00010012665 ENSGALG00010002411 ENSGALG00010017606 ENSGALG00010026352 ENSGALG00010002237 ENSGALG00010012555 ENSGALG00010027092 ENSGALG00010012707 ENSGALG00010028431 ENSGALG00010026306 ENSGALG00010017833 ENSGALG00010026219 ENSGALG00010010317 ENSGALG00010027482 ENSGALG00010029623 ENSGALG00010014138 ENSGALG00010012322 ENSGALG00010027306 ENSGALG00010026545 ENSGALG00010004765 ENSGALG00010018114 ENSGALG00010014029 ENSGALG00010019774 ENSGALG00010010093 ENSGALG00010024137 ENSGALG00010008225 ENSGALG00010010153 ENSGALG00010014432 ENSGALG00010018325 ENSGALG00010028337 ENSGALG00010022012 ENSGALG00010025742 ENSGALG00010030063 ENSGALG00010017052 ENSGALG00010024938 ENSGALG00010004529
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