Post by hugo on Mar 9, 2023 1:11:51 GMT -5
Hi all!
I'm using the Functional Annotation Tool and analyzing FDR results for KEGG_PATHWAY but when I compare these results with the ones I get from other tools (ShinyGO, etc) I find that numbers are very different. I read in another thread that FDR in DAVID was multiplied by 100, I don´t know if it is still valid but numbers are very different considering this anyways. Note: nGenes (Count) and Pathway Genes (PH) numbers are exactly the same in both tools.
Please let me know possible reasons for these differences.
Many thanks!
I'm using the Functional Annotation Tool and analyzing FDR results for KEGG_PATHWAY but when I compare these results with the ones I get from other tools (ShinyGO, etc) I find that numbers are very different. I read in another thread that FDR in DAVID was multiplied by 100, I don´t know if it is still valid but numbers are very different considering this anyways. Note: nGenes (Count) and Pathway Genes (PH) numbers are exactly the same in both tools.
Please let me know possible reasons for these differences.
Many thanks!