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Post by confusedgenes on Feb 9, 2023 10:02:51 GMT -5
Hey guys,
I got a list of accession numbers straight out of genbank, they look something like this: AY370877.1
DQ654493.1
DQ654492.1
etc.
Not only does the tool not recognize these as genbank, but the converter also doesn't, so I can't proceed with my analysis. I'm a little confused about what I'm doing wrong  |
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Brad
DAVID Bioinformatics Team
Posts: 67
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Post by Brad on Feb 9, 2023 11:11:23 GMT -5
Hello,
Thank you for the question. There are two things happening with your example list of Genbank accessions in terms of DAVID.
First, DAVID will not recognize Genbank accessions with the version number included. Therefore, you would need to submit AY370877, DQ654493 and DQ654492 to DAVID.
Secondly, these Genbank accessions are not in the DAVID Knowledgebase since they are not associated with NCBI Entrez Gene or Uniprot records which are used as the foundation for associating functional annotation to genes/proteins in DAVID.
I hope this helps.
Regards, Brad
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Post by confusedgenes on Feb 9, 2023 11:36:16 GMT -5
Hey Brad, thanks for letting me know. The version number comes with if you export from genbank, unless I've missed something, I don't think there is a method to export without version nr, so I guess that list would need some sort of manual pre-processing to remove the versions.
Thank you!
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Brad
DAVID Bioinformatics Team
Posts: 67
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Post by Brad on Feb 9, 2023 12:03:32 GMT -5
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