Post by DAVID user on Jul 21, 2020 14:35:03 GMT -5
Good afternoon DAVID team,
I have been trying to run my list of diff. expressed genes this afternoon, and I am getting stuck. Some of my genes IDs are listed below. I tried Functional Annotation -> Copy and paste my list (~13,000 up and down genes) -> Gene list. The problem is that none of the gene identifiers that I tried seem to recognize my list (isn't that just the gene symbol?). Anyway, when I tried to convert the list to the standard identifier, it gets stuck in 30% and never finishes. I was able to convert and run a smaller list (<3000 genes), but not my complete list. Even if I split between up and down regulated genes, I have more than 3000 in each list, and it doesn't finish. Is the size of my lists the problem? Any suggestions on how should I run this data? And, what type of identifier should I select to skip the conversion step and run the analysis directly?
Many thanks in advance!
Jaira
Partial list example:
HAS1
FCGR1A
MMP1
AURKB
CLEC4E
ST14
TREM1
CCL20
BCL2A1
MMP9
SPP1
CHI3L2
TMIGD3
I have been trying to run my list of diff. expressed genes this afternoon, and I am getting stuck. Some of my genes IDs are listed below. I tried Functional Annotation -> Copy and paste my list (~13,000 up and down genes) -> Gene list. The problem is that none of the gene identifiers that I tried seem to recognize my list (isn't that just the gene symbol?). Anyway, when I tried to convert the list to the standard identifier, it gets stuck in 30% and never finishes. I was able to convert and run a smaller list (<3000 genes), but not my complete list. Even if I split between up and down regulated genes, I have more than 3000 in each list, and it doesn't finish. Is the size of my lists the problem? Any suggestions on how should I run this data? And, what type of identifier should I select to skip the conversion step and run the analysis directly?
Many thanks in advance!
Jaira
Partial list example:
HAS1
FCGR1A
MMP1
AURKB
CLEC4E
ST14
TREM1
CCL20
BCL2A1
MMP9
SPP1
CHI3L2
TMIGD3