Post by Florencia Mascardi on Aug 3, 2021 17:44:57 GMT -5
Hello! I would really appreciate your help with this issue.
I have submitted a list of 1808 genes identified by official gene symbol. 1600 out of them have been recognized by DAVID's database. I am interested on the Gene Ontology related terms, and 88,7% (1419) of my genes got matched to a GO-BP term. I click on "Chart" but then only 229 chart records are shown, and at the bottom of this list it says "802 genes from your list are not in the output". So I'm missing over 50% of the genes here.
What is happening here? Is there some way I can solve this? I've already tried changing the threshold "Count" to 1, but nothing changed.
Thank you in advance for your response, and sorry if my English is not very good (my first language is Spanish).
The number of genes from your list in the output are depends on the thresholds. The default thresholds are count (gene count) = 2 and EASE (Modified Fisher Exact P-value, ranges 0 to 1) = 0.1. To display maximum number of genes shown on the list, set count = 1 and EASE = 1.0
Hello! I have a small query, Why are not we getting enrichment terms for all the genes we provided as input in the output file? There are always some genes left as xx genes from your list are not in the output.