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Post by mengwan on Jul 14, 2021 13:10:50 GMT -5
Hi, I noticeed that DAVID has a database for Kluyveromyces marxianus as I selected the identifier as "OFFICIAL_GENE_SYMBOL". However, when I create a gene list with genes names such as "LYS1 HIS3 LEU2 ARO8", I have an output error saying that they cannot be mapped to this species. What kind of "gene name" and the corresponding idendifier that I should input for the database you have for the non-conventional yeast species, KLuyveromyces marxianus?  Thank you, Mengwan
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Brad
DAVID Bioinformatics Team
Posts: 60
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Post by Brad on Jul 27, 2021 15:11:21 GMT -5
Hello Mengwan,
Currently, DAVID has mappings for 32 genes for this species:
ENTREZ_GENE_ID DAVID_GENE_NAME 20832299 ribosomal protein VAR1(KMAR_90001) 20832300 tRNA(KMAR_T9001) 20832301 tRNA(KMAR_T9007) 20832302 probable intron-encoded endonuclease aI2 (mitochondrion)(KMAR_90004) 20832303 probable intron-encoded endonuclease aI5 (mitochondrion)(KMAR_90005) 20832304 Intron-encoded DNA endonuclease aI4 (mitochondrion)(KMAR_90006) 20832305 cytochrome c oxidase subunit 1(KMAR_90007) 20832306 cytochrome c oxidase subunit 1(KMAR_90008) 20832307 small subunit ribosomal RNA(KMAR_R9001) 20832308 cytochrome c oxidase subunit 3(KMAR_90010) 20832309 large ribosomal RNA subunit(KMAR_R9002) 20832310 tRNA(KMAR_T9009) 20832311 tRNA(KMAR_T9010) 20832312 tRNA(KMAR_T9002) 20832313 tRNA(KMAR_T9003) 20832314 tRNA(KMAR_T9004) 20832315 tRNA(KMAR_T9005) 20832316 tRNA(KMAR_T9006) 20832317 cytochrome c oxidase subunit 2(KMAR_90002) 20832318 tRNA(KMAR_T9008) 20832319 cytochrome b(KMAR_90003) 20832320 ATP synthase subunit a(KMAR_90009) 20832321 tRNA(KMAR_T9011) 20832322 tRNA(KMAR_T9012) 20832323 tRNA(KMAR_T9013) 20832324 tRNA(KMAR_T9014) 20832325 tRNA(KMAR_T9015) 20832326 tRNA(KMAR_T9016) 20832327 tRNA(KMAR_T9017) 20832328 tRNA(KMAR_T9018) 20832329 tRNA(KMAR_T9019) 20832330 tRNA(KMAR_T9020)
Regards, Brad
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