kevn
New Member
Posts: 1
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Post by kevn on Oct 4, 2022 21:34:16 GMT -5
Hello DAVID team/userbase,
Brief background, I am just an intern at a bioinformatics lab and very very green in the field. So please excuse any potential mistakes in my line of questioning!.
I am looking to conduct some Gene ORA locally, and I want to use DAVID database to do this. My first step would be to compare the results from DAVID web service vs. a locally generated one.
Lets say I have a list of affyx gene IDs 1007_s_at 1053_at 117_at 121_at 1255_g_at 1294_at 1316_at 1320_at 1405_i_at 1431_at 1438_at 1487_at 1494_f_at 1598_g_at
(sample list from DAVID's page).
And I want to conduct the analysis using the homo sapiens default background, and only looking at the GOTERM_MF_ALL annotation.
Would I achieve the same result locally, If i used the AFFYMETRIX_3PRIME_IVT_ID2GOTERM_MF_ALL file as a background list? (downloaded from DAVID's database with homo sapiens as the species).
Thank you
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